Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015888747.1_cds_XP_016443367.1_38530
CDS Infomation

[gene=LOC107768739] [db_xref=GeneID:107768739] [protein=pectinesterase-like] [protein_id=XP_016443367.1] [location=complement(join(18838..19538,19748..20765))] [gbkey=CDS]
Sequence

ATGGTGGGAAAAATAGTGGTGTCGTTGGTATCCTTGATTCTAGTGGTGGGTGTGATATTG
GGGGTGGTGATCGTCCTGCACCAAGATGGCAGTTCAAAAGATGATGACCAAAGCACCAAA
GTCCAATTGAAGGCATCAGTTGAGGAGTTCTGTAAACCTGCGGAATTCAAAGAAGCTTGT
GCAAAGAGTCTTGATTCAGTGGCTAAGAACAATAGTGCTACCATGAAAGACTACCTCTTG
GTCTCCATCCAAATCACCGTGGATGAGGTCAAGAAATCTTTCGAGGTGGTGGAGAAGACT
TCTGTCAACAATGAAAGTGATCCTTACAATCACATGGCGGTAGAGGATTGCAAAGAGTTG
TTGCAGTATGCCATCGAGGAACTCCAGGCCTCCTACTCTATGGTTGGGGATACCGAATTG
CATTCCCTCAATGATCGTGTCAGCGAACTATTGAACTGGCTAGGTGCGGTGTACTCCTAT
CAAAGCATGTGCGTTGATGCTATCGAGAAGCCTGAATACAAATCCGCTATAGAAAAGGGA
ATGGTGAATGCAACCCAGCTGACCCACAATGCTATCAATATCGTAGCAAAAATGTCAACC
ATCCTCCAATCATTCAACGTCTCAATTCCGTCAAACCTTAAGAGCGCAGCTGGTAGCACA
TCTAATCGTCGCCTCCTTGAAGTTAACGAGATAGGTCATGACTCTTACCCTACATGGTTC
CCAGTTGCTGACCGTAAGCTTTTAGCAAGACATAGGTTTGTAACTCCACATGCAGTGGTT
GCCAAGGATGGGAGTGGCCAGTACAATACCGTCGCCGCTGCCCTCGCAGCATATCCCGAA
AACCATAGAGGCAAATACATAGTCTATGTCAAAGCTGGCATCTATGAAGAGCATATCATC
ATCTCTAAAAAGCAACCAAACGTTTTTATCTTTGGCAATGGAGCAGGGGAAACCATCATT
ACTGGAAATAGAAACTTTGCTCTAATGAAAATACCCACCCAAGACACTGCTACTTTCTCT
GTACTTGGCAATGGGTTTGTTGCTAGGGGAATTACCTTCCGAAACACTGCTGGTCCAGAA
GGGCACCAAGCTGTGGCTCTTCGAATTAACGGTGATATGGCTGCTGTTTTTGACTGCAGC
ATTGAAGGTTATCAAGACACTTTGTACTATCAAAACCATCGCCAATTTTATCGCAACTGT
GTCATCTCTGGTACCGTAGACTTCATCTTTGGCAGGGGCTCAGCGGTAATCCAAAACAGT
TTGATCATAGCGAGGAAACCTTTGGCGGGACAGTTCAATACTATTACCGCTGATGGCAAA
GAAATTGCGCTTAAACCCGGTGGAGTGGTATTCCAGAACTGTAGAGTCGTCCCAGAAGTA
GAATTATTTCCAGTTAGGTTCCAACTTCCAACTTACTTGGGTCGTCCCTGGAAGGCCTAC
TCAACCACAGTATTCATGGAGAGTGAATTGGGTGATTTCATCCGCCCAGAAGGTTGGATG
ACATGGCAAGGCGAAACGTTCGAGCAGACATGTCATTACTATGAGTTCGCCAACCGTGGA
CCTGGTGCTCTCATCAATAACAGGAACAGAAGTTTCAAGAACTTCCGTCTTATTAGCCCA
GAAGAAGCAGCTCAATACACAGCTGCCCCCTGGATTAACGGAGATATGTGGTTGAGGCAC
ACTGGTGCACCTTTTTACCTTGGCCTCGGAGGAAGATAA

Peptide Sequence

PEP ID

XP_016443367.1
PEP Infomation

PREDICTED: pectinesterase-like [Nicotiana tabacum]
Sequence

MVGKIVVSLVSLILVVGVILGVVIVLHQDGSSKDDDQSTKVQLKASVEEFCKPAEFKEAC
AKSLDSVAKNNSATMKDYLLVSIQITVDEVKKSFEVVEKTSVNNESDPYNHMAVEDCKEL
LQYAIEELQASYSMVGDTELHSLNDRVSELLNWLGAVYSYQSMCVDAIEKPEYKSAIEKG
MVNATQLTHNAINIVAKMSTILQSFNVSIPSNLKSAAGSTSNRRLLEVNEIGHDSYPTWF
PVADRKLLARHRFVTPHAVVAKDGSGQYNTVAAALAAYPENHRGKYIVYVKAGIYEEHII
ISKKQPNVFIFGNGAGETIITGNRNFALMKIPTQDTATFSVLGNGFVARGITFRNTAGPE
GHQAVALRINGDMAAVFDCSIEGYQDTLYYQNHRQFYRNCVISGTVDFIFGRGSAVIQNS
LIIARKPLAGQFNTITADGKEIALKPGGVVFQNCRVVPEVELFPVRFQLPTYLGRPWKAY
STTVFMESELGDFIRPEGWMTWQGETFEQTCHYYEFANRGPGALINNRNRSFKNFRLISP
EEAAQYTAAPWINGDMWLRHTGAPFYLGLGGR

Transcript Sequence

Gene sequence data has not been registered.